J6_8EV6_003

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8EV6|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EV6|1|2A|G|44
8EV6|1|2A|C|45
*
8EV6|1|2A|G|179
8EV6|1|2A|G|180
8EV6|1|2A|A|181
8EV6|1|2A|A|182
8EV6|1|2A|C|183
*
8EV6|1|2A|G|214
8EV6|1|2A|G|215
8EV6|1|2A|A|216
8EV6|1|2A|G|217
8EV6|1|2A|A|218
8EV6|1|2A|G|219
8EV6|1|2A|G|220
8EV6|1|2A|A|221
8EV6|1|2A|A|222
8EV6|1|2A|A|223
8EV6|1|2A|G|224
*
8EV6|1|2A|C|231
8EV6|1|2A|G|232
8EV6|1|2A|A|233
8EV6|1|2A|C|234
8EV6|1|2A|U|235
*
8EV6|1|2A|A|262
8EV6|1|2A|C|263
8EV6|1|2A|C|264
8EV6|1|2A|A|265
8EV6|1|2A|G|266
*
8EV6|1|2A|C|426
8EV6|1|2A|U|427
8EV6|1|2A|A|428
8EV6|1|2A|A|429
8EV6|1|2A|G|430
8EV6|1|2A|U|431
8EV6|1|2A|A|432
8EV6|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34