J6_8EVR_001
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8EVR|1|A1|A|67, 8EVR|1|A1|U|329, 8EVR|1|A4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVR|1|A1|G|22
8EVR|1|A1|A|23
8EVR|1|A1|G|24
8EVR|1|A1|U|25
8EVR|1|A1|A|26
8EVR|1|A1|C|27
*
8EVR|1|A1|G|58
8EVR|1|A1|G|59
8EVR|1|A1|A|60
8EVR|1|A1|A|61
8EVR|1|A1|A|62
8EVR|1|A1|A|63
8EVR|1|A1|G|64
8EVR|1|A1|A|65
8EVR|1|A1|A|66
8EVR|1|A1|A|67
8EVR|1|A1|C|68
*
8EVR|1|A1|G|75
8EVR|1|A1|G|76
8EVR|1|A1|A|77
8EVR|1|A1|U|78
8EVR|1|A1|U|79
*
8EVR|1|A1|A|106
8EVR|1|A1|A|107
8EVR|1|A1|A|108
8EVR|1|A1|A|109
8EVR|1|A1|G|110
*
8EVR|1|A1|C|321
8EVR|1|A1|U|322
8EVR|1|A1|A|323
8EVR|1|A1|A|324
8EVR|1|A1|A|325
8EVR|1|A1|U|326
8EVR|1|A1|A|327
8EVR|1|A1|U|328
8EVR|1|A1|U|329
8EVR|1|A1|G|330
8EVR|1|A1|G|331
*
8EVR|1|A4|C|32
8EVR|1|A4|A|33
8EVR|1|A4|U|34
8EVR|1|A4|C|35
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Ai
- 60S ribosomal protein L36-A
- Chain Aj
- 60S ribosomal protein L37-A
Coloring options: