Loop J6_8EWC

3D structure

PDB id: 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.45 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 8EWC|1|A1|A|67, 8EWC|1|A1|U|329, 8EWC|1|A4|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8EWC|1|A1|G|22
8EWC|1|A1|A|23
8EWC|1|A1|G|24
8EWC|1|A1|U|25
8EWC|1|A1|A|26
8EWC|1|A1|C|27
*
8EWC|1|A1|G|58
8EWC|1|A1|G|59
8EWC|1|A1|A|60
8EWC|1|A1|A|61
8EWC|1|A1|A|62
8EWC|1|A1|A|63
8EWC|1|A1|G|64
8EWC|1|A1|A|65
8EWC|1|A1|A|66
8EWC|1|A1|A|67
8EWC|1|A1|C|68
*
8EWC|1|A1|G|75
8EWC|1|A1|G|76
8EWC|1|A1|A|77
8EWC|1|A1|U|78
8EWC|1|A1|U|79
*
8EWC|1|A1|A|106
8EWC|1|A1|A|107
8EWC|1|A1|A|108
8EWC|1|A1|A|109
8EWC|1|A1|G|110
*
8EWC|1|A1|C|321
8EWC|1|A1|U|322
8EWC|1|A1|A|323
8EWC|1|A1|A|324
8EWC|1|A1|A|325
8EWC|1|A1|U|326
8EWC|1|A1|A|327
8EWC|1|A1|U|328
8EWC|1|A1|U|329
8EWC|1|A1|G|330
8EWC|1|A1|G|331
*
8EWC|1|A4|C|32
8EWC|1|A4|A|33
8EWC|1|A4|U|34
8EWC|1|A4|C|35

Current chains

Chain A1: 25S rRNA
Chain A4: 5.8 S rRNA

Nearby chains

Chain AC: RPL4A isoform 1
Chain AL: 60S ribosomal protein L13-A
Chain AN: 60S ribosomal protein L15-A
Chain Ah: 60S ribosomal protein L35-A
Chain Ai: 60S ribosomal protein L36-A
Chain Aj: 60S ribosomal protein L37-A

J6_8EWC_001