3D structure

PDB id
8FC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.45 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
8FC4|1|2A|U|2076, 8FC4|1|2A|A|2388, 8FC4|1|2A|U|2390, 8FC4|1|2A|G|2428, 8FC4|1|2A|A|2430, 8FC4|1|2A|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FC4|1|2A|U|2074
8FC4|1|2A|U|2075
8FC4|1|2A|U|2076
8FC4|1|2A|A|2077
*
8FC4|1|2A|U|2243
8FC4|1|2A|U|2244
8FC4|1|2A|U|2245
8FC4|1|2A|G|2246
*
8FC4|1|2A|C|2258
8FC4|1|2A|G|2259
*
8FC4|1|2A|C|2281
8FC4|1|2A|G|2282
8FC4|1|2A|C|2283
8FC4|1|2A|C|2284
*
8FC4|1|2A|G|2384
8FC4|1|2A|C|2385
8FC4|1|2A|C|2386
8FC4|1|2A|U|2387
8FC4|1|2A|A|2388
8FC4|1|2A|G|2389
8FC4|1|2A|U|2390
8FC4|1|2A|G|2391
8FC4|1|2A|A|2392
8FC4|1|2A|A|2393
8FC4|1|2A|C|2394
8FC4|1|2A|C|2395
*
8FC4|1|2A|G|2421
8FC4|1|2A|A|2422
8FC4|1|2A|U|2423
8FC4|1|2A|C|2424
8FC4|1|2A|A|2425
8FC4|1|2A|A|2426
8FC4|1|2A|C|2427
8FC4|1|2A|G|2428
8FC4|1|2A|G|2429
8FC4|1|2A|A|2430
8FC4|1|2A|U|2431
8FC4|1|2A|A|2432
8FC4|1|2A|A|2433
8FC4|1|2A|A|2434
8FC4|1|2A|A|2435

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 21
50S ribosomal protein L28
Chain 26
50S ribosomal protein L33
Chain 28
50S ribosomal protein L35
Chain 2D
50S ribosomal protein L2
Chain 2P
50S ribosomal protein L15
Chain 2Z
50S ribosomal protein L25

Coloring options:

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