J6_8FC6_003

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8FC6|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC6|1|2A|G|44
8FC6|1|2A|C|45
*
8FC6|1|2A|G|179
8FC6|1|2A|G|180
8FC6|1|2A|A|181
8FC6|1|2A|A|182
8FC6|1|2A|C|183
*
8FC6|1|2A|G|214
8FC6|1|2A|G|215
8FC6|1|2A|A|216
8FC6|1|2A|G|217
8FC6|1|2A|A|218
8FC6|1|2A|G|219
8FC6|1|2A|G|220
8FC6|1|2A|A|221
8FC6|1|2A|A|222
8FC6|1|2A|A|223
8FC6|1|2A|G|224
*
8FC6|1|2A|C|231
8FC6|1|2A|G|232
8FC6|1|2A|A|233
8FC6|1|2A|C|234
8FC6|1|2A|U|235
*
8FC6|1|2A|A|262
8FC6|1|2A|C|263
8FC6|1|2A|C|264
8FC6|1|2A|A|265
8FC6|1|2A|G|266
*
8FC6|1|2A|C|426
8FC6|1|2A|U|427
8FC6|1|2A|A|428
8FC6|1|2A|A|429
8FC6|1|2A|G|430
8FC6|1|2A|U|431
8FC6|1|2A|A|432
8FC6|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34