J6_8FKW_001
3D structure
- PDB id
- 8FKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUC*GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 8FKW|1|L1|U|34, 8FKW|1|L3|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FKW|1|L1|G|33
8FKW|1|L1|U|34
8FKW|1|L1|C|35
*
8FKW|1|L3|G|21
8FKW|1|L3|G|22
8FKW|1|L3|C|23
8FKW|1|L3|G|24
8FKW|1|L3|A|25
8FKW|1|L3|C|26
*
8FKW|1|L3|G|57
8FKW|1|L3|G|58
8FKW|1|L3|A|59
8FKW|1|L3|G|60
8FKW|1|L3|A|61
8FKW|1|L3|A|62
8FKW|1|L3|G|63
8FKW|1|L3|A|64
8FKW|1|L3|A|65
8FKW|1|L3|A|66
8FKW|1|L3|C|67
*
8FKW|1|L3|G|74
8FKW|1|L3|G|75
8FKW|1|L3|A|76
8FKW|1|L3|U|77
8FKW|1|L3|U|78
*
8FKW|1|L3|A|105
8FKW|1|L3|A|106
8FKW|1|L3|G|107
8FKW|1|L3|A|108
8FKW|1|L3|G|109
*
8FKW|1|L3|C|332
8FKW|1|L3|U|333
8FKW|1|L3|A|334
8FKW|1|L3|A|335
8FKW|1|L3|A|336
8FKW|1|L3|U|337
8FKW|1|L3|A|338
8FKW|1|L3|C|339
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LS
- 60S ribosomal protein L35
- Chain LU
- 60S ribosomal protein L36
- Chain LW
- 60S ribosomal protein L37
- Chain SO
- Ribosome biogenesis protein BRX1 homolog
- Chain SZ
- Nucleolar protein 16
Coloring options: