J6_8FKX_001
3D structure
- PDB id
- 8FKX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUC*GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 8FKX|1|L1|U|34, 8FKX|1|L3|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FKX|1|L1|G|33
8FKX|1|L1|U|34
8FKX|1|L1|C|35
*
8FKX|1|L3|G|21
8FKX|1|L3|G|22
8FKX|1|L3|C|23
8FKX|1|L3|G|24
8FKX|1|L3|A|25
8FKX|1|L3|C|26
*
8FKX|1|L3|G|57
8FKX|1|L3|G|58
8FKX|1|L3|A|59
8FKX|1|L3|G|60
8FKX|1|L3|A|61
8FKX|1|L3|A|62
8FKX|1|L3|G|63
8FKX|1|L3|A|64
8FKX|1|L3|A|65
8FKX|1|L3|A|66
8FKX|1|L3|C|67
*
8FKX|1|L3|G|74
8FKX|1|L3|G|75
8FKX|1|L3|A|76
8FKX|1|L3|U|77
8FKX|1|L3|U|78
*
8FKX|1|L3|A|105
8FKX|1|L3|A|106
8FKX|1|L3|G|107
8FKX|1|L3|A|108
8FKX|1|L3|G|109
*
8FKX|1|L3|C|332
8FKX|1|L3|U|333
8FKX|1|L3|A|334
8FKX|1|L3|A|335
8FKX|1|L3|A|336
8FKX|1|L3|U|337
8FKX|1|L3|A|338
8FKX|1|L3|C|339
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain LS
- 60S ribosomal protein L35
- Chain LU
- 60S ribosomal protein L36
- Chain LW
- 60S ribosomal protein L37
- Chain SZ
- Nucleolar protein 16
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