J6_8FL2_003

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU(PSU)CUG*CG*CUUAAGGUAGC(5MC)*GA(PSU)GA(A2M)C

Length

40 nucleotides

Bulged bases

8FL2|1|L3|G|3776, 8FL2|1|L3|A|3779, 8FL2|1|L3|G|3823

QA status

Modified nucleotides: PSU, 5MC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL2|1|L3|G|3634
8FL2|1|L3|A|3635
8FL2|1|L3|C|3636
8FL2|1|L3|PSU|3637
8FL2|1|L3|G|3638
*
8FL2|1|L3|C|3650
8FL2|1|L3|A|3651
8FL2|1|L3|A|3652
8FL2|1|L3|A|3653
8FL2|1|L3|G|3654
*
8FL2|1|L3|U|3690
8FL2|1|L3|G|3691
8FL2|1|L3|A|3692
8FL2|1|L3|U|3693
8FL2|1|L3|U|3694
8FL2|1|L3|PSU|3695
8FL2|1|L3|C|3696
8FL2|1|L3|U|3697
8FL2|1|L3|G|3698
*
8FL2|1|L3|C|3752
8FL2|1|L3|G|3753
*
8FL2|1|L3|C|3771
8FL2|1|L3|U|3772
8FL2|1|L3|U|3773
8FL2|1|L3|A|3774
8FL2|1|L3|A|3775
8FL2|1|L3|G|3776
8FL2|1|L3|G|3777
8FL2|1|L3|U|3778
8FL2|1|L3|A|3779
8FL2|1|L3|G|3780
8FL2|1|L3|C|3781
8FL2|1|L3|5MC|3782
*
8FL2|1|L3|G|3820
8FL2|1|L3|A|3821
8FL2|1|L3|PSU|3822
8FL2|1|L3|G|3823
8FL2|1|L3|A|3824
8FL2|1|L3|A2M|3825
8FL2|1|L3|C|3826

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a

Chain NC

Nucleolar GTP-binding protein 2

Chain NU

Testis-expressed protein 10

Chain SF

60S ribosomal protein L8