J6_8FL4_002

3D structure

PDB id

8FL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8FL4|1|L3|C|1501, 8FL4|1|L3|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL4|1|L3|C|1352
8FL4|1|L3|G|1353
8FL4|1|L3|A|1354
8FL4|1|L3|G|1355
*
8FL4|1|L3|C|1384
8FL4|1|L3|G|1385
8FL4|1|L3|C|1386
8FL4|1|L3|A|1387
8FL4|1|L3|A|1388
*
8FL4|1|L3|U|1395
8FL4|1|L3|G|1396
8FL4|1|L3|A|1397
8FL4|1|L3|A|1398
8FL4|1|L3|G|1399
*
8FL4|1|L3|C|1418
8FL4|1|L3|G|1419
8FL4|1|L3|A|1420
8FL4|1|L3|G|1421
*
8FL4|1|L3|C|1464
8FL4|1|L3|G|1465
8FL4|1|L3|G|1466
*
8FL4|1|L3|C|1499
8FL4|1|L3|A|1500
8FL4|1|L3|C|1501
8FL4|1|L3|G|1502
8FL4|1|L3|A|1503
8FL4|1|L3|G|1504

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain LB

60S ribosomal protein L18

Chain LK

60S ribosomal protein L27a

Chain LU

60S ribosomal protein L36

Chain SA

60S ribosomal protein L4