J6_8FL4_003

3D structure

PDB id

8FL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU(PSU)CUG*CG*CUUAAGGUAGC(5MC)*GA(PSU)GA(A2M)C

Length

40 nucleotides

Bulged bases

8FL4|1|L3|G|3776, 8FL4|1|L3|A|3779, 8FL4|1|L3|G|3823

QA status

Modified nucleotides: PSU, 5MC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL4|1|L3|G|3634
8FL4|1|L3|A|3635
8FL4|1|L3|C|3636
8FL4|1|L3|PSU|3637
8FL4|1|L3|G|3638
*
8FL4|1|L3|C|3650
8FL4|1|L3|A|3651
8FL4|1|L3|A|3652
8FL4|1|L3|A|3653
8FL4|1|L3|G|3654
*
8FL4|1|L3|U|3690
8FL4|1|L3|G|3691
8FL4|1|L3|A|3692
8FL4|1|L3|U|3693
8FL4|1|L3|U|3694
8FL4|1|L3|PSU|3695
8FL4|1|L3|C|3696
8FL4|1|L3|U|3697
8FL4|1|L3|G|3698
*
8FL4|1|L3|C|3752
8FL4|1|L3|G|3753
*
8FL4|1|L3|C|3771
8FL4|1|L3|U|3772
8FL4|1|L3|U|3773
8FL4|1|L3|A|3774
8FL4|1|L3|A|3775
8FL4|1|L3|G|3776
8FL4|1|L3|G|3777
8FL4|1|L3|U|3778
8FL4|1|L3|A|3779
8FL4|1|L3|G|3780
8FL4|1|L3|C|3781
8FL4|1|L3|5MC|3782
*
8FL4|1|L3|G|3820
8FL4|1|L3|A|3821
8FL4|1|L3|PSU|3822
8FL4|1|L3|G|3823
8FL4|1|L3|A|3824
8FL4|1|L3|A2M|3825
8FL4|1|L3|C|3826

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a

Chain NC

Nucleolar GTP-binding protein 2

Chain NU

Testis-expressed protein 10

Chain SF

60S ribosomal protein L8