J6_8FZD_001

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8FZD|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZD|1|A|G|45
8FZD|1|A|G|46
*
8FZD|1|A|C|179
8FZD|1|A|G|180
8FZD|1|A|A|181
8FZD|1|A|A|182
8FZD|1|A|C|183
*
8FZD|1|A|G|214
8FZD|1|A|G|215
8FZD|1|A|A|216
8FZD|1|A|A|217
8FZD|1|A|A|218
8FZD|1|A|A|219
8FZD|1|A|G|220
8FZD|1|A|A|221
8FZD|1|A|A|222
8FZD|1|A|A|223
8FZD|1|A|U|224
*
8FZD|1|A|A|231
8FZD|1|A|G|232
8FZD|1|A|A|233
8FZD|1|A|U|234
8FZD|1|A|U|235
*
8FZD|1|A|A|262
8FZD|1|A|G|263
8FZD|1|A|C|264
8FZD|1|A|A|265
8FZD|1|A|G|266
*
8FZD|1|A|C|426
8FZD|1|A|U|427
8FZD|1|A|A|428
8FZD|1|A|A|429
8FZD|1|A|A|430
8FZD|1|A|U|431
8FZD|1|A|A|432
8FZD|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34