J6_8FZF_001

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8FZF|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZF|1|A|G|45
8FZF|1|A|G|46
*
8FZF|1|A|C|179
8FZF|1|A|G|180
8FZF|1|A|A|181
8FZF|1|A|A|182
8FZF|1|A|C|183
*
8FZF|1|A|G|214
8FZF|1|A|G|215
8FZF|1|A|A|216
8FZF|1|A|A|217
8FZF|1|A|A|218
8FZF|1|A|A|219
8FZF|1|A|G|220
8FZF|1|A|A|221
8FZF|1|A|A|222
8FZF|1|A|A|223
8FZF|1|A|U|224
*
8FZF|1|A|A|231
8FZF|1|A|G|232
8FZF|1|A|A|233
8FZF|1|A|U|234
8FZF|1|A|U|235
*
8FZF|1|A|A|262
8FZF|1|A|G|263
8FZF|1|A|C|264
8FZF|1|A|A|265
8FZF|1|A|G|266
*
8FZF|1|A|C|426
8FZF|1|A|U|427
8FZF|1|A|A|428
8FZF|1|A|A|429
8FZF|1|A|A|430
8FZF|1|A|U|431
8FZF|1|A|A|432
8FZF|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34