J6_8FZJ_001

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8FZJ|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZJ|1|A|G|45
8FZJ|1|A|G|46
*
8FZJ|1|A|C|179
8FZJ|1|A|G|180
8FZJ|1|A|A|181
8FZJ|1|A|A|182
8FZJ|1|A|C|183
*
8FZJ|1|A|G|214
8FZJ|1|A|G|215
8FZJ|1|A|A|216
8FZJ|1|A|A|217
8FZJ|1|A|A|218
8FZJ|1|A|A|219
8FZJ|1|A|G|220
8FZJ|1|A|A|221
8FZJ|1|A|A|222
8FZJ|1|A|A|223
8FZJ|1|A|U|224
*
8FZJ|1|A|A|231
8FZJ|1|A|G|232
8FZJ|1|A|A|233
8FZJ|1|A|U|234
8FZJ|1|A|U|235
*
8FZJ|1|A|A|262
8FZJ|1|A|G|263
8FZJ|1|A|C|264
8FZJ|1|A|A|265
8FZJ|1|A|G|266
*
8FZJ|1|A|C|426
8FZJ|1|A|U|427
8FZJ|1|A|A|428
8FZJ|1|A|A|429
8FZJ|1|A|A|430
8FZJ|1|A|U|431
8FZJ|1|A|A|432
8FZJ|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34