J6_8G2C_003

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8G2C|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2C|1|2A|G|44
8G2C|1|2A|C|45
*
8G2C|1|2A|G|179
8G2C|1|2A|G|180
8G2C|1|2A|A|181
8G2C|1|2A|A|182
8G2C|1|2A|C|183
*
8G2C|1|2A|G|214
8G2C|1|2A|G|215
8G2C|1|2A|A|216
8G2C|1|2A|G|217
8G2C|1|2A|A|218
8G2C|1|2A|G|219
8G2C|1|2A|G|220
8G2C|1|2A|A|221
8G2C|1|2A|A|222
8G2C|1|2A|A|223
8G2C|1|2A|G|224
*
8G2C|1|2A|C|231
8G2C|1|2A|G|232
8G2C|1|2A|A|233
8G2C|1|2A|C|234
8G2C|1|2A|U|235
*
8G2C|1|2A|A|262
8G2C|1|2A|C|263
8G2C|1|2A|C|264
8G2C|1|2A|A|265
8G2C|1|2A|G|266
*
8G2C|1|2A|C|426
8G2C|1|2A|U|427
8G2C|1|2A|A|428
8G2C|1|2A|A|429
8G2C|1|2A|G|430
8G2C|1|2A|U|431
8G2C|1|2A|A|432
8G2C|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34