J6_8G6Y_001

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8G6Y|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6Y|1|a|G|45
8G6Y|1|a|G|46
*
8G6Y|1|a|C|179
8G6Y|1|a|G|180
8G6Y|1|a|A|181
8G6Y|1|a|A|182
8G6Y|1|a|C|183
*
8G6Y|1|a|G|214
8G6Y|1|a|G|215
8G6Y|1|a|A|216
8G6Y|1|a|A|217
8G6Y|1|a|A|218
8G6Y|1|a|A|219
8G6Y|1|a|G|220
8G6Y|1|a|A|221
8G6Y|1|a|A|222
8G6Y|1|a|A|223
8G6Y|1|a|U|224
*
8G6Y|1|a|A|231
8G6Y|1|a|G|232
8G6Y|1|a|A|233
8G6Y|1|a|U|234
8G6Y|1|a|U|235
*
8G6Y|1|a|A|262
8G6Y|1|a|G|263
8G6Y|1|a|C|264
8G6Y|1|a|A|265
8G6Y|1|a|G|266
*
8G6Y|1|a|C|426
8G6Y|1|a|U|427
8G6Y|1|a|A|428
8G6Y|1|a|A|429
8G6Y|1|a|A|430
8G6Y|1|a|U|431
8G6Y|1|a|A|432
8G6Y|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34