J6_8G6Y_002

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

8G6Y|1|a|U|2076, 8G6Y|1|a|A|2388, 8G6Y|1|a|U|2390, 8G6Y|1|a|G|2428, 8G6Y|1|a|A|2430, 8G6Y|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6Y|1|a|U|2074
8G6Y|1|a|U|2075
8G6Y|1|a|U|2076
8G6Y|1|a|A|2077
*
8G6Y|1|a|U|2243
8G6Y|1|a|U|2244
8G6Y|1|a|U|2245
8G6Y|1|a|G|2246
*
8G6Y|1|a|C|2258
8G6Y|1|a|U|2259
*
8G6Y|1|a|A|2281
8G6Y|1|a|G|2282
8G6Y|1|a|C|2283
8G6Y|1|a|A|2284
*
8G6Y|1|a|U|2384
8G6Y|1|a|C|2385
8G6Y|1|a|A|2386
8G6Y|1|a|U|2387
8G6Y|1|a|A|2388
8G6Y|1|a|G|2389
8G6Y|1|a|U|2390
8G6Y|1|a|G|2391
8G6Y|1|a|A|2392
8G6Y|1|a|U|2393
8G6Y|1|a|C|2394
8G6Y|1|a|C|2395
*
8G6Y|1|a|G|2421
8G6Y|1|a|C|2422
8G6Y|1|a|U|2423
8G6Y|1|a|C|2424
8G6Y|1|a|A|2425
8G6Y|1|a|A|2426
8G6Y|1|a|C|2427
8G6Y|1|a|G|2428
8G6Y|1|a|G|2429
8G6Y|1|a|A|2430
8G6Y|1|a|U|2431
8G6Y|1|a|A|2432
8G6Y|1|a|A|2433
8G6Y|1|a|A|2434
8G6Y|1|a|A|2435

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

50S ribosomal protein L35

Chain c

50S ribosomal protein L2

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L27

Chain w

50S ribosomal protein L28