J6_8G7S_002

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

8G7S|1|A|U|2076, 8G7S|1|A|A|2388, 8G7S|1|A|U|2390, 8G7S|1|A|G|2428, 8G7S|1|A|A|2430, 8G7S|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G7S|1|A|U|2074
8G7S|1|A|U|2075
8G7S|1|A|U|2076
8G7S|1|A|A|2077
*
8G7S|1|A|U|2243
8G7S|1|A|U|2244
8G7S|1|A|U|2245
8G7S|1|A|G|2246
*
8G7S|1|A|C|2258
8G7S|1|A|U|2259
*
8G7S|1|A|A|2281
8G7S|1|A|G|2282
8G7S|1|A|C|2283
8G7S|1|A|A|2284
*
8G7S|1|A|U|2384
8G7S|1|A|C|2385
8G7S|1|A|A|2386
8G7S|1|A|U|2387
8G7S|1|A|A|2388
8G7S|1|A|G|2389
8G7S|1|A|U|2390
8G7S|1|A|G|2391
8G7S|1|A|A|2392
8G7S|1|A|U|2393
8G7S|1|A|C|2394
8G7S|1|A|C|2395
*
8G7S|1|A|G|2421
8G7S|1|A|C|2422
8G7S|1|A|U|2423
8G7S|1|A|C|2424
8G7S|1|A|A|2425
8G7S|1|A|A|2426
8G7S|1|A|C|2427
8G7S|1|A|G|2428
8G7S|1|A|G|2429
8G7S|1|A|A|2430
8G7S|1|A|U|2431
8G7S|1|A|A|2432
8G7S|1|A|A|2433
8G7S|1|A|A|2434
8G7S|1|A|A|2435

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain C

50S ribosomal protein L2

Chain N

50S ribosomal protein L15

Chain Y

50S ribosomal protein L27

Chain Z

50S ribosomal protein L28

Chain y

Transfer RNA; tRNA