J6_8I9Y_001
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGGAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACCGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8I9Y|1|C1|A|67, 8I9Y|1|C1|C|321, 8I9Y|1|C2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9Y|1|C1|G|22
8I9Y|1|C1|A|23
8I9Y|1|C1|G|24
8I9Y|1|C1|G|25
8I9Y|1|C1|A|26
8I9Y|1|C1|C|27
*
8I9Y|1|C1|G|58
8I9Y|1|C1|G|59
8I9Y|1|C1|A|60
8I9Y|1|C1|A|61
8I9Y|1|C1|A|62
8I9Y|1|C1|A|63
8I9Y|1|C1|G|64
8I9Y|1|C1|A|65
8I9Y|1|C1|A|66
8I9Y|1|C1|A|67
8I9Y|1|C1|C|68
*
8I9Y|1|C1|G|75
8I9Y|1|C1|G|76
8I9Y|1|C1|A|77
8I9Y|1|C1|U|78
8I9Y|1|C1|U|79
*
8I9Y|1|C1|A|106
8I9Y|1|C1|A|107
8I9Y|1|C1|C|108
8I9Y|1|C1|A|109
8I9Y|1|C1|G|110
*
8I9Y|1|C1|C|313
8I9Y|1|C1|U|314
8I9Y|1|C1|A|315
8I9Y|1|C1|A|316
8I9Y|1|C1|A|317
8I9Y|1|C1|U|318
8I9Y|1|C1|A|319
8I9Y|1|C1|C|320
8I9Y|1|C1|C|321
8I9Y|1|C1|G|322
8I9Y|1|C1|G|323
*
8I9Y|1|C2|C|32
8I9Y|1|C2|A|33
8I9Y|1|C2|U|34
8I9Y|1|C2|C|35
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain CR
- Nucleolar protein 16
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
- Chain Lj
- Ribosomal protein L37
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