J6_8IE3_003

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGAC*GUUUG*CA*UGUCC*GGCCUCACGAUCCU*A(OMG)(MHG)UGUCAGAAAA

Length

44 nucleotides

Bulged bases

8IE3|1|2|G|3922, 8IE3|1|2|A|4376, 8IE3|1|2|A|4378, 8IE3|1|2|A|4379

QA status

Modified nucleotides: OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|U|3920
8IE3|1|2|U|3921
8IE3|1|2|G|3922
8IE3|1|2|A|3923
8IE3|1|2|C|3924
*
8IE3|1|2|G|4187
8IE3|1|2|U|4188
8IE3|1|2|U|4189
8IE3|1|2|U|4190
8IE3|1|2|G|4191
*
8IE3|1|2|C|4204
8IE3|1|2|A|4205
*
8IE3|1|2|U|4227
8IE3|1|2|G|4228
8IE3|1|2|U|4229
8IE3|1|2|C|4230
8IE3|1|2|C|4231
*
8IE3|1|2|G|4330
8IE3|1|2|G|4331
8IE3|1|2|C|4332
8IE3|1|2|C|4333
8IE3|1|2|U|4334
8IE3|1|2|C|4335
8IE3|1|2|A|4336
8IE3|1|2|C|4337
8IE3|1|2|G|4338
8IE3|1|2|A|4339
8IE3|1|2|U|4340
8IE3|1|2|C|4341
8IE3|1|2|C|4342
8IE3|1|2|U|4343
*
8IE3|1|2|A|4369
8IE3|1|2|OMG|4370
8IE3|1|2|MHG|4371
8IE3|1|2|U|4372
8IE3|1|2|G|4373
8IE3|1|2|U|4374
8IE3|1|2|C|4375
8IE3|1|2|A|4376
8IE3|1|2|G|4377
8IE3|1|2|A|4378
8IE3|1|2|A|4379
8IE3|1|2|A|4380
8IE3|1|2|A|4381

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15

Chain c

60S ribosomal protein L21

Chain m

60S ribosomal protein L8