J6_8IFB_001

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8IFB|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFB|1|a|G|45
8IFB|1|a|G|46
*
8IFB|1|a|C|179
8IFB|1|a|G|180
8IFB|1|a|A|181
8IFB|1|a|A|182
8IFB|1|a|C|183
*
8IFB|1|a|G|214
8IFB|1|a|G|215
8IFB|1|a|A|216
8IFB|1|a|A|217
8IFB|1|a|A|218
8IFB|1|a|A|219
8IFB|1|a|G|220
8IFB|1|a|A|221
8IFB|1|a|A|222
8IFB|1|a|A|223
8IFB|1|a|U|224
*
8IFB|1|a|A|231
8IFB|1|a|G|232
8IFB|1|a|A|233
8IFB|1|a|U|234
8IFB|1|a|U|235
*
8IFB|1|a|A|262
8IFB|1|a|G|263
8IFB|1|a|C|264
8IFB|1|a|A|265
8IFB|1|a|G|266
*
8IFB|1|a|C|426
8IFB|1|a|U|427
8IFB|1|a|A|428
8IFB|1|a|A|429
8IFB|1|a|A|430
8IFB|1|a|U|431
8IFB|1|a|A|432
8IFB|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34