J6_8IFC_001

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8IFC|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFC|1|a|G|45
8IFC|1|a|G|46
*
8IFC|1|a|C|179
8IFC|1|a|G|180
8IFC|1|a|A|181
8IFC|1|a|A|182
8IFC|1|a|C|183
*
8IFC|1|a|G|214
8IFC|1|a|G|215
8IFC|1|a|A|216
8IFC|1|a|A|217
8IFC|1|a|A|218
8IFC|1|a|A|219
8IFC|1|a|G|220
8IFC|1|a|A|221
8IFC|1|a|A|222
8IFC|1|a|A|223
8IFC|1|a|U|224
*
8IFC|1|a|A|231
8IFC|1|a|G|232
8IFC|1|a|A|233
8IFC|1|a|U|234
8IFC|1|a|U|235
*
8IFC|1|a|A|262
8IFC|1|a|G|263
8IFC|1|a|C|264
8IFC|1|a|A|265
8IFC|1|a|G|266
*
8IFC|1|a|C|426
8IFC|1|a|U|427
8IFC|1|a|A|428
8IFC|1|a|A|429
8IFC|1|a|A|430
8IFC|1|a|U|431
8IFC|1|a|A|432
8IFC|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34