J6_8IFD_002
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 8IFD|1|1A|C|1501, 8IFD|1|1A|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|C|1352
8IFD|1|1A|G|1353
8IFD|1|1A|A|1354
8IFD|1|1A|G|1355
*
8IFD|1|1A|C|1384
8IFD|1|1A|G|1385
8IFD|1|1A|C|1386
8IFD|1|1A|A|1387
8IFD|1|1A|A|1388
*
8IFD|1|1A|U|1395
8IFD|1|1A|G|1396
8IFD|1|1A|A|1397
8IFD|1|1A|A|1398
8IFD|1|1A|G|1399
*
8IFD|1|1A|C|1418
8IFD|1|1A|G|1419
8IFD|1|1A|A|1420
8IFD|1|1A|G|1421
*
8IFD|1|1A|C|1464
8IFD|1|1A|G|1465
8IFD|1|1A|G|1466
*
8IFD|1|1A|C|1499
8IFD|1|1A|A|1500
8IFD|1|1A|C|1501
8IFD|1|1A|G|1502
8IFD|1|1A|A|1503
8IFD|1|1A|G|1504
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2F
- 60S ribosomal protein L13
- Chain 2K
- 60S ribosomal protein L18
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain 2c
- 60S ribosomal protein L36
Coloring options: