J6_8IFE_001
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8IFE|1|1A|A|66, 8IFE|1|1C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|1A|G|21
8IFE|1|1A|G|22
8IFE|1|1A|C|23
8IFE|1|1A|G|24
8IFE|1|1A|A|25
8IFE|1|1A|C|26
*
8IFE|1|1A|G|57
8IFE|1|1A|G|58
8IFE|1|1A|A|59
8IFE|1|1A|G|60
8IFE|1|1A|A|61
8IFE|1|1A|A|62
8IFE|1|1A|G|63
8IFE|1|1A|A|64
8IFE|1|1A|A|65
8IFE|1|1A|A|66
8IFE|1|1A|C|67
*
8IFE|1|1A|G|74
8IFE|1|1A|G|75
8IFE|1|1A|A|76
8IFE|1|1A|U|77
8IFE|1|1A|U|78
*
8IFE|1|1A|A|105
8IFE|1|1A|A|106
8IFE|1|1A|G|107
8IFE|1|1A|A|108
8IFE|1|1A|G|109
*
8IFE|1|1A|C|332
8IFE|1|1A|U|333
8IFE|1|1A|A|334
8IFE|1|1A|A|335
8IFE|1|1A|A|336
8IFE|1|1A|U|337
8IFE|1|1A|A|338
8IFE|1|1A|C|339
*
8IFE|1|1C|G|33
8IFE|1|1C|U|34
8IFE|1|1C|C|35
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2b
- 60S ribosomal protein L35
- Chain 2c
- 60S ribosomal protein L36
- Chain 2d
- 60S ribosomal protein L37
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