J6_8IFE_003
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8IFE|1|1A|G|3922, 8IFE|1|1A|C|4337, 8IFE|1|1A|A|4376, 8IFE|1|1A|A|4378, 8IFE|1|1A|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|1A|U|3920
8IFE|1|1A|U|3921
8IFE|1|1A|G|3922
8IFE|1|1A|A|3923
*
8IFE|1|1A|U|4188
8IFE|1|1A|U|4189
8IFE|1|1A|U|4190
8IFE|1|1A|G|4191
*
8IFE|1|1A|C|4204
8IFE|1|1A|A|4205
*
8IFE|1|1A|U|4227
8IFE|1|1A|G|4228
8IFE|1|1A|U|4229
8IFE|1|1A|C|4230
*
8IFE|1|1A|G|4331
8IFE|1|1A|C|4332
8IFE|1|1A|C|4333
8IFE|1|1A|U|4334
8IFE|1|1A|C|4335
8IFE|1|1A|A|4336
8IFE|1|1A|C|4337
8IFE|1|1A|G|4338
8IFE|1|1A|A|4339
8IFE|1|1A|U|4340
8IFE|1|1A|C|4341
8IFE|1|1A|C|4342
*
8IFE|1|1A|G|4370
8IFE|1|1A|G|4371
8IFE|1|1A|U|4372
8IFE|1|1A|G|4373
8IFE|1|1A|U|4374
8IFE|1|1A|C|4375
8IFE|1|1A|A|4376
8IFE|1|1A|G|4377
8IFE|1|1A|A|4378
8IFE|1|1A|A|4379
8IFE|1|1A|A|4380
8IFE|1|1A|A|4381
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2H
- 60S ribosomal protein L15
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain 2i
- 60S ribosomal protein L36a
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