J6_8INE_003
3D structure
- PDB id
- 8INE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State G'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGAC*GUUUG*CA*UGUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUCAGAAAA
- Length
- 40 nucleotides
- Bulged bases
- 8INE|1|2|G|3922, 8INE|1|2|C|4337, 8INE|1|2|A|4376, 8INE|1|2|A|4378, 8INE|1|2|A|4379
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8INE|1|2|U|3920
8INE|1|2|U|3921
8INE|1|2|G|3922
8INE|1|2|A|3923
8INE|1|2|C|3924
*
8INE|1|2|G|4187
8INE|1|2|U|4188
8INE|1|2|U|4189
8INE|1|2|U|4190
8INE|1|2|G|4191
*
8INE|1|2|C|4204
8INE|1|2|A|4205
*
8INE|1|2|U|4227
8INE|1|2|G|4228
8INE|1|2|U|4229
8INE|1|2|C|4230
*
8INE|1|2|G|4331
8INE|1|2|C|4332
8INE|1|2|C|4333
8INE|1|2|U|4334
8INE|1|2|5MC|4335
8INE|1|2|A|4336
8INE|1|2|C|4337
8INE|1|2|G|4338
8INE|1|2|A|4339
8INE|1|2|U|4340
8INE|1|2|C|4341
8INE|1|2|C|4342
*
8INE|1|2|OMG|4370
8INE|1|2|MHG|4371
8INE|1|2|U|4372
8INE|1|2|G|4373
8INE|1|2|U|4374
8INE|1|2|C|4375
8INE|1|2|A|4376
8INE|1|2|G|4377
8INE|1|2|A|4378
8INE|1|2|A|4379
8INE|1|2|A|4380
8INE|1|2|A|4381
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L27a
- Chain U
- 60S ribosomal protein L15
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
- Chain m
- 60S ribosomal protein L8
Coloring options: