J6_8INE_004

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUCAGAAAA

Length

38 nucleotides

Bulged bases

8INE|1|2|G|3922, 8INE|1|2|C|4337, 8INE|1|2|A|4376, 8INE|1|2|A|4378, 8INE|1|2|A|4379

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INE|1|2|U|3920
8INE|1|2|U|3921
8INE|1|2|G|3922
8INE|1|2|A|3923
*
8INE|1|2|U|4188
8INE|1|2|U|4189
8INE|1|2|U|4190
8INE|1|2|G|4191
*
8INE|1|2|C|4204
8INE|1|2|A|4205
*
8INE|1|2|U|4227
8INE|1|2|G|4228
8INE|1|2|U|4229
8INE|1|2|C|4230
*
8INE|1|2|G|4331
8INE|1|2|C|4332
8INE|1|2|C|4333
8INE|1|2|U|4334
8INE|1|2|5MC|4335
8INE|1|2|A|4336
8INE|1|2|C|4337
8INE|1|2|G|4338
8INE|1|2|A|4339
8INE|1|2|U|4340
8INE|1|2|C|4341
8INE|1|2|C|4342
*
8INE|1|2|OMG|4370
8INE|1|2|MHG|4371
8INE|1|2|U|4372
8INE|1|2|G|4373
8INE|1|2|U|4374
8INE|1|2|C|4375
8INE|1|2|A|4376
8INE|1|2|G|4377
8INE|1|2|A|4378
8INE|1|2|A|4379
8INE|1|2|A|4380
8INE|1|2|A|4381

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain m

60S ribosomal protein L8