J6_8INF_001

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC

Length

38 nucleotides

Bulged bases

8INF|1|2|A|66, 8INF|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INF|1|2|G|21
8INF|1|2|G|22
8INF|1|2|C|23
8INF|1|2|G|24
8INF|1|2|A|25
8INF|1|2|C|26
*
8INF|1|2|G|57
8INF|1|2|G|58
8INF|1|2|A|59
8INF|1|2|G|60
8INF|1|2|A|61
8INF|1|2|A|62
8INF|1|2|G|63
8INF|1|2|A|64
8INF|1|2|A|65
8INF|1|2|A|66
8INF|1|2|C|67
*
8INF|1|2|G|74
8INF|1|2|G|75
8INF|1|2|A|76
8INF|1|2|U|77
8INF|1|2|U|78
*
8INF|1|2|A|105
8INF|1|2|A|106
8INF|1|2|G|107
8INF|1|2|A|108
8INF|1|2|G|109
*
8INF|1|2|C|332
8INF|1|2|U|333
8INF|1|2|A|334
8INF|1|2|A|335
8INF|1|2|A|336
8INF|1|2|U|337
8INF|1|2|A|338
8INF|1|2|C|339
*
8INF|1|8|G|33
8INF|1|8|U|34
8INF|1|8|C|35

Current chains

Chain 2

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain K

60S ribosomal protein L36

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15