J6_8INF_003

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGA*UUUGA*UAC*GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUCAGAAAA

Length

39 nucleotides

Bulged bases

8INF|1|2|G|3922, 8INF|1|2|G|4191, 8INF|1|2|C|4337, 8INF|1|2|U|4374, 8INF|1|2|A|4376, 8INF|1|2|A|4378, 8INF|1|2|A|4379

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INF|1|2|U|3920
8INF|1|2|U|3921
8INF|1|2|G|3922
8INF|1|2|A|3923
*
8INF|1|2|U|4188
8INF|1|2|U|4189
8INF|1|2|U|4190
8INF|1|2|G|4191
8INF|1|2|A|4192
*
8INF|1|2|U|4202
8INF|1|2|A|4203
8INF|1|2|C|4204
*
8INF|1|2|G|4228
8INF|1|2|U|4229
8INF|1|2|C|4230
*
8INF|1|2|G|4331
8INF|1|2|C|4332
8INF|1|2|C|4333
8INF|1|2|U|4334
8INF|1|2|5MC|4335
8INF|1|2|A|4336
8INF|1|2|C|4337
8INF|1|2|G|4338
8INF|1|2|A|4339
8INF|1|2|U|4340
8INF|1|2|C|4341
8INF|1|2|C|4342
*
8INF|1|2|OMG|4370
8INF|1|2|MHG|4371
8INF|1|2|U|4372
8INF|1|2|G|4373
8INF|1|2|U|4374
8INF|1|2|C|4375
8INF|1|2|A|4376
8INF|1|2|G|4377
8INF|1|2|A|4378
8INF|1|2|A|4379
8INF|1|2|A|4380
8INF|1|2|A|4381

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain f

Protein SDA1 homolog

Chain m

60S ribosomal protein L8