J6_8INK_002

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8INK|1|2|C|1501, 8INK|1|2|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|1352
8INK|1|2|G|1353
8INK|1|2|A|1354
8INK|1|2|G|1355
*
8INK|1|2|C|1384
8INK|1|2|G|1385
8INK|1|2|C|1386
8INK|1|2|A|1387
8INK|1|2|A|1388
*
8INK|1|2|U|1395
8INK|1|2|G|1396
8INK|1|2|A|1397
8INK|1|2|A|1398
8INK|1|2|G|1399
*
8INK|1|2|C|1418
8INK|1|2|G|1419
8INK|1|2|A|1420
8INK|1|2|G|1421
*
8INK|1|2|C|1464
8INK|1|2|G|1465
8INK|1|2|G|1466
*
8INK|1|2|C|1499
8INK|1|2|A|1500
8INK|1|2|C|1501
8INK|1|2|G|1502
8INK|1|2|A|1503
8INK|1|2|G|1504

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18