J6_8IPD_002

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8IPD|1|2|C|1501, 8IPD|1|2|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|1352
8IPD|1|2|G|1353
8IPD|1|2|A|1354
8IPD|1|2|G|1355
*
8IPD|1|2|C|1384
8IPD|1|2|G|1385
8IPD|1|2|C|1386
8IPD|1|2|A|1387
8IPD|1|2|A|1388
*
8IPD|1|2|U|1395
8IPD|1|2|G|1396
8IPD|1|2|A|1397
8IPD|1|2|A|1398
8IPD|1|2|G|1399
*
8IPD|1|2|C|1418
8IPD|1|2|G|1419
8IPD|1|2|A|1420
8IPD|1|2|G|1421
*
8IPD|1|2|C|1464
8IPD|1|2|G|1465
8IPD|1|2|G|1466
*
8IPD|1|2|C|1499
8IPD|1|2|A|1500
8IPD|1|2|C|1501
8IPD|1|2|G|1502
8IPD|1|2|A|1503
8IPD|1|2|G|1504

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18