3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
8IPY|1|2|A|66, 8IPY|1|8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8IPY|1|2|G|21
8IPY|1|2|G|22
8IPY|1|2|C|23
8IPY|1|2|G|24
8IPY|1|2|A|25
8IPY|1|2|C|26
*
8IPY|1|2|G|57
8IPY|1|2|G|58
8IPY|1|2|A|59
8IPY|1|2|G|60
8IPY|1|2|A|61
8IPY|1|2|A|62
8IPY|1|2|G|63
8IPY|1|2|A|64
8IPY|1|2|A|65
8IPY|1|2|A|66
8IPY|1|2|C|67
*
8IPY|1|2|G|74
8IPY|1|2|G|75
8IPY|1|2|A|76
8IPY|1|2|U|77
8IPY|1|2|U|78
*
8IPY|1|2|A|105
8IPY|1|2|A|106
8IPY|1|2|G|107
8IPY|1|2|A|108
8IPY|1|2|G|109
*
8IPY|1|2|C|332
8IPY|1|2|U|333
8IPY|1|2|A|334
8IPY|1|2|A|335
8IPY|1|2|A|336
8IPY|1|2|U|337
8IPY|1|2|A|338
8IPY|1|2|C|339
*
8IPY|1|8|G|33
8IPY|1|8|U|34
8IPY|1|8|C|35

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain H
60S ribosomal protein L35
Chain K
60S ribosomal protein L36
Chain M
60S ribosomal protein L37
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15

Coloring options:

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