J6_8IPY_002

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8IPY|1|2|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|C|1352
8IPY|1|2|G|1353
8IPY|1|2|A|1354
8IPY|1|2|G|1355
*
8IPY|1|2|C|1384
8IPY|1|2|G|1385
8IPY|1|2|C|1386
8IPY|1|2|A|1387
8IPY|1|2|A|1388
*
8IPY|1|2|U|1395
8IPY|1|2|G|1396
8IPY|1|2|A|1397
8IPY|1|2|A|1398
8IPY|1|2|G|1399
*
8IPY|1|2|C|1418
8IPY|1|2|G|1419
8IPY|1|2|A|1420
8IPY|1|2|G|1421
*
8IPY|1|2|C|1464
8IPY|1|2|G|1465
8IPY|1|2|G|1466
*
8IPY|1|2|C|1499
8IPY|1|2|A|1500
8IPY|1|2|C|1501
8IPY|1|2|G|1502
8IPY|1|2|A|1503
8IPY|1|2|G|1504

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18