J6_8IR1_002

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8IR1|1|2|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|1352
8IR1|1|2|G|1353
8IR1|1|2|A|1354
8IR1|1|2|G|1355
*
8IR1|1|2|C|1384
8IR1|1|2|G|1385
8IR1|1|2|C|1386
8IR1|1|2|A|1387
8IR1|1|2|A|1388
*
8IR1|1|2|U|1395
8IR1|1|2|G|1396
8IR1|1|2|A|1397
8IR1|1|2|A|1398
8IR1|1|2|G|1399
*
8IR1|1|2|C|1418
8IR1|1|2|G|1419
8IR1|1|2|A|1420
8IR1|1|2|G|1421
*
8IR1|1|2|C|1464
8IR1|1|2|G|1465
8IR1|1|2|G|1466
*
8IR1|1|2|C|1499
8IR1|1|2|A|1500
8IR1|1|2|C|1501
8IR1|1|2|G|1502
8IR1|1|2|A|1503
8IR1|1|2|G|1504

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18