J6_8IR3_001
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8IR3|1|2|A|66, 8IR3|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IR3|1|2|G|21
8IR3|1|2|G|22
8IR3|1|2|C|23
8IR3|1|2|G|24
8IR3|1|2|A|25
8IR3|1|2|C|26
*
8IR3|1|2|G|57
8IR3|1|2|G|58
8IR3|1|2|A|59
8IR3|1|2|G|60
8IR3|1|2|A|61
8IR3|1|2|A|62
8IR3|1|2|G|63
8IR3|1|2|A|64
8IR3|1|2|A|65
8IR3|1|2|A|66
8IR3|1|2|C|67
*
8IR3|1|2|G|74
8IR3|1|2|G|75
8IR3|1|2|A|76
8IR3|1|2|U|77
8IR3|1|2|U|78
*
8IR3|1|2|A|105
8IR3|1|2|A|106
8IR3|1|2|G|107
8IR3|1|2|A|108
8IR3|1|2|G|109
*
8IR3|1|2|C|332
8IR3|1|2|U|333
8IR3|1|2|A|334
8IR3|1|2|A|335
8IR3|1|2|A|336
8IR3|1|2|U|337
8IR3|1|2|A|338
8IR3|1|2|C|339
*
8IR3|1|8|G|33
8IR3|1|8|U|34
8IR3|1|8|C|35
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L35
- Chain K
- 60S ribosomal protein L36
- Chain M
- 60S ribosomal protein L37
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
Coloring options: