J6_8J1Z_001

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8J1Z|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8J1Z|1|a|G|45
8J1Z|1|a|G|46
*
8J1Z|1|a|C|179
8J1Z|1|a|G|180
8J1Z|1|a|A|181
8J1Z|1|a|A|182
8J1Z|1|a|C|183
*
8J1Z|1|a|G|214
8J1Z|1|a|G|215
8J1Z|1|a|A|216
8J1Z|1|a|A|217
8J1Z|1|a|A|218
8J1Z|1|a|A|219
8J1Z|1|a|G|220
8J1Z|1|a|A|221
8J1Z|1|a|A|222
8J1Z|1|a|A|223
8J1Z|1|a|U|224
*
8J1Z|1|a|A|231
8J1Z|1|a|G|232
8J1Z|1|a|A|233
8J1Z|1|a|U|234
8J1Z|1|a|U|235
*
8J1Z|1|a|A|262
8J1Z|1|a|G|263
8J1Z|1|a|C|264
8J1Z|1|a|A|265
8J1Z|1|a|G|266
*
8J1Z|1|a|C|426
8J1Z|1|a|U|427
8J1Z|1|a|A|428
8J1Z|1|a|A|429
8J1Z|1|a|A|430
8J1Z|1|a|U|431
8J1Z|1|a|A|432
8J1Z|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34