J6_8JDK_001
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8JDK|1|D|A|66, 8JDK|1|F|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDK|1|D|G|21
8JDK|1|D|G|22
8JDK|1|D|C|23
8JDK|1|D|G|24
8JDK|1|D|A|25
8JDK|1|D|C|26
*
8JDK|1|D|G|57
8JDK|1|D|G|58
8JDK|1|D|A|59
8JDK|1|D|G|60
8JDK|1|D|A|61
8JDK|1|D|A|62
8JDK|1|D|G|63
8JDK|1|D|A|64
8JDK|1|D|A|65
8JDK|1|D|A|66
8JDK|1|D|C|67
*
8JDK|1|D|G|74
8JDK|1|D|G|75
8JDK|1|D|A|76
8JDK|1|D|U|77
8JDK|1|D|U|78
*
8JDK|1|D|A|105
8JDK|1|D|A|106
8JDK|1|D|G|107
8JDK|1|D|A|108
8JDK|1|D|G|109
*
8JDK|1|D|C|332
8JDK|1|D|U|333
8JDK|1|D|A|334
8JDK|1|D|A|335
8JDK|1|D|A|336
8JDK|1|D|U|337
8JDK|1|D|A|338
8JDK|1|D|C|339
*
8JDK|1|F|G|33
8JDK|1|F|U|34
8JDK|1|F|C|35
Current chains
- Chain D
- 28S ribosomal RNA
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain m
- 60S ribosomal protein L35
- Chain n
- 60S ribosomal protein L36
- Chain o
- 60S ribosomal protein L37
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