J6_8K2A_002
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 8K2A|1|L1|U|1069, 8K2A|1|L1|U|1225, 8K2A|1|L1|G|1246, 8K2A|1|L1|A|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2A|1|L1|U|1067
8K2A|1|L1|U|1068
8K2A|1|L1|U|1069
8K2A|1|L1|A|1070
*
8K2A|1|L1|U|1137
8K2A|1|L1|U|1138
8K2A|1|L1|C|1139
8K2A|1|L1|G|1140
*
8K2A|1|L1|C|1152
8K2A|1|L1|U|1153
*
8K2A|1|L1|A|1175
8K2A|1|L1|G|1176
8K2A|1|L1|C|1177
8K2A|1|L1|A|1178
*
8K2A|1|L1|U|1220
8K2A|1|L1|C|1221
8K2A|1|L1|A|1222
8K2A|1|L1|A|1223
8K2A|1|L1|U|1224
8K2A|1|L1|U|1225
8K2A|1|L1|G|1226
8K2A|1|L1|A|1227
8K2A|1|L1|U|1228
8K2A|1|L1|C|1229
8K2A|1|L1|C|1230
*
8K2A|1|L1|G|1239
8K2A|1|L1|A|1240
8K2A|1|L1|C|1241
8K2A|1|L1|C|1242
8K2A|1|L1|A|1243
8K2A|1|L1|A|1244
8K2A|1|L1|C|1245
8K2A|1|L1|G|1246
8K2A|1|L1|G|1247
8K2A|1|L1|A|1248
8K2A|1|L1|A|1249
8K2A|1|L1|C|1250
8K2A|1|L1|A|1251
8K2A|1|L1|A|1252
Current chains
- Chain L1
- 16S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL2m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Lb
- Large ribosomal subunit protein bL28m
- Chain Lg
- Large ribosomal subunit protein bL33m
- Chain Li
- Large ribosomal subunit protein bL35m
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