J6_8K82_001
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8K82|1|C1|A|67, 8K82|1|C1|U|329, 8K82|1|C3|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|G|22
8K82|1|C1|A|23
8K82|1|C1|G|24
8K82|1|C1|U|25
8K82|1|C1|A|26
8K82|1|C1|C|27
*
8K82|1|C1|G|58
8K82|1|C1|G|59
8K82|1|C1|A|60
8K82|1|C1|A|61
8K82|1|C1|A|62
8K82|1|C1|A|63
8K82|1|C1|G|64
8K82|1|C1|A|65
8K82|1|C1|A|66
8K82|1|C1|A|67
8K82|1|C1|C|68
*
8K82|1|C1|G|75
8K82|1|C1|G|76
8K82|1|C1|A|77
8K82|1|C1|U|78
8K82|1|C1|U|79
*
8K82|1|C1|A|106
8K82|1|C1|A|107
8K82|1|C1|A|108
8K82|1|C1|A|109
8K82|1|C1|G|110
*
8K82|1|C1|C|321
8K82|1|C1|U|322
8K82|1|C1|A|323
8K82|1|C1|A|324
8K82|1|C1|A|325
8K82|1|C1|U|326
8K82|1|C1|A|327
8K82|1|C1|U|328
8K82|1|C1|U|329
8K82|1|C1|G|330
8K82|1|C1|G|331
*
8K82|1|C3|C|32
8K82|1|C3|A|33
8K82|1|C3|U|34
8K82|1|C3|C|35
Current chains
- Chain C1
- 23S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Li
- Large ribosomal subunit protein eL36A
- Chain Lj
- Large ribosomal subunit protein eL37A
Coloring options: