J6_8OEQ_001
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8OEQ|1|1|A|66, 8OEQ|1|1|U|329, 8OEQ|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|1|G|21
8OEQ|1|1|A|22
8OEQ|1|1|C|23
8OEQ|1|1|U|24
8OEQ|1|1|A|25
8OEQ|1|1|C|26
*
8OEQ|1|1|G|57
8OEQ|1|1|G|58
8OEQ|1|1|A|59
8OEQ|1|1|A|60
8OEQ|1|1|A|61
8OEQ|1|1|A|62
8OEQ|1|1|G|63
8OEQ|1|1|A|64
8OEQ|1|1|A|65
8OEQ|1|1|A|66
8OEQ|1|1|C|67
*
8OEQ|1|1|G|74
8OEQ|1|1|G|75
8OEQ|1|1|A|76
8OEQ|1|1|U|77
8OEQ|1|1|U|78
*
8OEQ|1|1|A|105
8OEQ|1|1|A|106
8OEQ|1|1|A|107
8OEQ|1|1|A|108
8OEQ|1|1|G|109
*
8OEQ|1|1|C|321
8OEQ|1|1|U|322
8OEQ|1|1|A|323
8OEQ|1|1|A|324
8OEQ|1|1|A|325
8OEQ|1|1|U|326
8OEQ|1|1|A|327
8OEQ|1|1|U|328
8OEQ|1|1|U|329
8OEQ|1|1|G|330
8OEQ|1|1|G|331
*
8OEQ|1|4|C|32
8OEQ|1|4|A|33
8OEQ|1|4|U|34
8OEQ|1|4|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain AI
- Ribosomal protein L29
- Chain AJ
- 60S ribosomal protein L36
- Chain AK
- 60S ribosomal protein L37-B
- Chain l
- 60S ribosomal protein L4-B
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
Coloring options: