J6_8OEQ_002
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8OEQ|1|1|G|2396, 8OEQ|1|1|C|2732, 8OEQ|1|1|A|2771, 8OEQ|1|1|A|2773, 8OEQ|1|1|A|2774
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|1|U|2394
8OEQ|1|1|U|2395
8OEQ|1|1|G|2396
8OEQ|1|1|A|2397
*
8OEQ|1|1|U|2583
8OEQ|1|1|U|2584
8OEQ|1|1|U|2585
8OEQ|1|1|G|2586
*
8OEQ|1|1|C|2599
8OEQ|1|1|A|2600
*
8OEQ|1|1|U|2622
8OEQ|1|1|G|2623
8OEQ|1|1|U|2624
8OEQ|1|1|C|2625
*
8OEQ|1|1|G|2726
8OEQ|1|1|C|2727
8OEQ|1|1|C|2728
8OEQ|1|1|U|2729
8OEQ|1|1|A|2730
8OEQ|1|1|U|2731
8OEQ|1|1|C|2732
8OEQ|1|1|G|2733
8OEQ|1|1|A|2734
8OEQ|1|1|U|2735
8OEQ|1|1|C|2736
8OEQ|1|1|C|2737
*
8OEQ|1|1|G|2765
8OEQ|1|1|G|2766
8OEQ|1|1|U|2767
8OEQ|1|1|G|2768
8OEQ|1|1|C|2769
8OEQ|1|1|C|2770
8OEQ|1|1|A|2771
8OEQ|1|1|G|2772
8OEQ|1|1|A|2773
8OEQ|1|1|A|2774
8OEQ|1|1|A|2775
8OEQ|1|1|A|2776
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AB
- 60S ribosomal protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AP
- 60S ribosomal protein L42-B
- Chain j
- 60S ribosomal protein L2-B
- Chain v
- 60S ribosomal protein L15-A
- Chain y
- 60S ribosomal protein L18-A
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