Loop J6_8OH6

3D structure

PDB id: 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å

Loop

Sequence: GACUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 8OH6|1|AS|A|66, 8OH6|1|AS|U|329, 8OH6|1|AU|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OH6|1|AS|G|21
8OH6|1|AS|A|22
8OH6|1|AS|C|23
8OH6|1|AS|U|24
8OH6|1|AS|A|25
8OH6|1|AS|C|26
*
8OH6|1|AS|G|57
8OH6|1|AS|G|58
8OH6|1|AS|A|59
8OH6|1|AS|A|60
8OH6|1|AS|A|61
8OH6|1|AS|A|62
8OH6|1|AS|G|63
8OH6|1|AS|A|64
8OH6|1|AS|A|65
8OH6|1|AS|A|66
8OH6|1|AS|C|67
*
8OH6|1|AS|G|74
8OH6|1|AS|G|75
8OH6|1|AS|A|76
8OH6|1|AS|U|77
8OH6|1|AS|U|78
*
8OH6|1|AS|A|105
8OH6|1|AS|A|106
8OH6|1|AS|A|107
8OH6|1|AS|A|108
8OH6|1|AS|G|109
*
8OH6|1|AS|C|321
8OH6|1|AS|U|322
8OH6|1|AS|A|323
8OH6|1|AS|A|324
8OH6|1|AS|A|325
8OH6|1|AS|U|326
8OH6|1|AS|A|327
8OH6|1|AS|U|328
8OH6|1|AS|U|329
8OH6|1|AS|G|330
8OH6|1|AS|G|331
*
8OH6|1|AU|C|32
8OH6|1|AU|A|33
8OH6|1|AU|U|34
8OH6|1|AU|C|35

Current chains

Chain AS: 25S (gene name XR_002086444.1)
Chain AU: 5.8S

Nearby chains

Chain AY: 60S ribosomal protein L4-B
Chain BG: 60S ribosomal protein L13
Chain BI: 60S ribosomal protein L15-A
Chain CC: Ribosomal protein L29
Chain CD: 60S ribosomal protein L36
Chain CE: 60S ribosomal protein L37-B

J6_8OH6_003