J6_8OHD_001
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8OHD|1|5|A|66, 8OHD|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OHD|1|5|G|21
8OHD|1|5|G|22
8OHD|1|5|C|23
8OHD|1|5|G|24
8OHD|1|5|A|25
8OHD|1|5|C|26
*
8OHD|1|5|G|57
8OHD|1|5|G|58
8OHD|1|5|A|59
8OHD|1|5|G|60
8OHD|1|5|A|61
8OHD|1|5|A|62
8OHD|1|5|G|63
8OHD|1|5|A|64
8OHD|1|5|A|65
8OHD|1|5|A|66
8OHD|1|5|C|67
*
8OHD|1|5|G|74
8OHD|1|5|G|75
8OHD|1|5|A|76
8OHD|1|5|U|77
8OHD|1|5|U|78
*
8OHD|1|5|A|105
8OHD|1|5|A|106
8OHD|1|5|G|107
8OHD|1|5|A|108
8OHD|1|5|G|109
*
8OHD|1|5|C|332
8OHD|1|5|U|333
8OHD|1|5|A|334
8OHD|1|5|A|335
8OHD|1|5|A|336
8OHD|1|5|U|337
8OHD|1|5|A|338
8OHD|1|5|C|339
*
8OHD|1|8|G|33
8OHD|1|8|U|34
8OHD|1|8|C|35
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
- Chain Lj
- 60S ribosomal protein L37
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