J6_8OIT_001
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUAG*CAA*UUAG*CACUA*UUGUAG*CACACCCAAU
- Length
- 34 nucleotides
- Bulged bases
- 8OIT|1|B8|U|360, 8OIT|1|B8|A|427, 8OIT|1|B8|G|470, 8OIT|1|B8|C|592
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIT|1|B8|A|357
8OIT|1|B8|G|358
8OIT|1|B8|A|359
8OIT|1|B8|U|360
8OIT|1|B8|A|361
8OIT|1|B8|G|362
*
8OIT|1|B8|C|373
8OIT|1|B8|A|374
8OIT|1|B8|A|375
*
8OIT|1|B8|U|425
8OIT|1|B8|U|426
8OIT|1|B8|A|427
8OIT|1|B8|G|428
*
8OIT|1|B8|C|453
8OIT|1|B8|A|454
8OIT|1|B8|C|455
8OIT|1|B8|U|456
8OIT|1|B8|A|457
*
8OIT|1|B8|U|468
8OIT|1|B8|U|469
8OIT|1|B8|G|470
8OIT|1|B8|U|471
8OIT|1|B8|A|472
8OIT|1|B8|G|473
*
8OIT|1|B8|C|587
8OIT|1|B8|A|588
8OIT|1|B8|C|589
8OIT|1|B8|A|590
8OIT|1|B8|C|591
8OIT|1|B8|C|592
8OIT|1|B8|C|593
8OIT|1|B8|A|594
8OIT|1|B8|A|595
8OIT|1|B8|U|596
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BG
- 39S ribosomal protein L30, mitochondrial
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BP
- 39S ribosomal protein L10, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain BU
- 39S ribosomal protein L16, mitochondrial
- Chain BY
- 39S ribosomal protein L20, mitochondrial
- Chain BZ
- 39S ribosomal protein L21, mitochondrial
- Chain Ba
- 39S ribosomal protein L52, mitochondrial
- Chain Be
- Ribosomal protein 63, mitochondrial
- Chain Bz
- 39S ribosomal protein L51, mitochondrial
Coloring options: