J6_8OO0_004
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8OO0|1|1|G|2381, 8OO0|1|1|C|2719, 8OO0|1|1|A|2758, 8OO0|1|1|A|2760, 8OO0|1|1|A|2761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OO0|1|1|U|2379
8OO0|1|1|U|2380
8OO0|1|1|G|2381
8OO0|1|1|A|2382
*
8OO0|1|1|U|2570
8OO0|1|1|U|2571
8OO0|1|1|U|2572
8OO0|1|1|G|2573
*
8OO0|1|1|C|2586
8OO0|1|1|A|2587
*
8OO0|1|1|U|2609
8OO0|1|1|G|2610
8OO0|1|1|U|2611
8OO0|1|1|C|2612
*
8OO0|1|1|G|2713
8OO0|1|1|C|2714
8OO0|1|1|C|2715
8OO0|1|1|U|2716
8OO0|1|1|A|2717
8OO0|1|1|U|2718
8OO0|1|1|C|2719
8OO0|1|1|G|2720
8OO0|1|1|A|2721
8OO0|1|1|U|2722
8OO0|1|1|C|2723
8OO0|1|1|C|2724
*
8OO0|1|1|G|2752
8OO0|1|1|G|2753
8OO0|1|1|U|2754
8OO0|1|1|G|2755
8OO0|1|1|C|2756
8OO0|1|1|C|2757
8OO0|1|1|A|2758
8OO0|1|1|G|2759
8OO0|1|1|A|2760
8OO0|1|1|A|2761
8OO0|1|1|A|2762
8OO0|1|1|A|2763
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain C
- Ribosome-associated molecular chaperone SSB1
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain LQ
- Ribosomal protein L18-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain La
- Ribosomal protein L18e/L15P domain-containing protein
- Chain Lo
- 60S ribosomal protein L44-like protein
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