J6_8P2F_001

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

8P2F|1|A|C|184, 8P2F|1|A|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2F|1|A|G|45
8P2F|1|A|C|46
*
8P2F|1|A|G|181
8P2F|1|A|C|182
8P2F|1|A|A|183
8P2F|1|A|C|184
8P2F|1|A|A|185
8P2F|1|A|C|186
*
8P2F|1|A|G|217
8P2F|1|A|G|218
8P2F|1|A|A|219
8P2F|1|A|A|220
8P2F|1|A|G|221
8P2F|1|A|A|222
8P2F|1|A|G|223
8P2F|1|A|A|224
8P2F|1|A|A|225
8P2F|1|A|A|226
8P2F|1|A|G|227
*
8P2F|1|A|C|234
8P2F|1|A|G|235
8P2F|1|A|A|236
8P2F|1|A|U|237
8P2F|1|A|U|238
*
8P2F|1|A|A|265
8P2F|1|A|A|266
8P2F|1|A|G|267
8P2F|1|A|A|268
8P2F|1|A|G|269
*
8P2F|1|A|C|472
8P2F|1|A|U|473
8P2F|1|A|A|474
8P2F|1|A|A|475
8P2F|1|A|A|476
8P2F|1|A|U|477
8P2F|1|A|A|478
8P2F|1|A|C|479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34