J6_8P85_001
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8P85|1|1|A|67, 8P85|1|1|U|329, 8P85|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P85|1|1|G|22
8P85|1|1|A|23
8P85|1|1|G|24
8P85|1|1|U|25
8P85|1|1|A|26
8P85|1|1|C|27
*
8P85|1|1|G|58
8P85|1|1|G|59
8P85|1|1|A|60
8P85|1|1|A|61
8P85|1|1|A|62
8P85|1|1|A|63
8P85|1|1|G|64
8P85|1|1|A|65
8P85|1|1|A|66
8P85|1|1|A|67
8P85|1|1|C|68
*
8P85|1|1|G|75
8P85|1|1|G|76
8P85|1|1|A|77
8P85|1|1|U|78
8P85|1|1|U|79
*
8P85|1|1|A|106
8P85|1|1|A|107
8P85|1|1|A|108
8P85|1|1|A|109
8P85|1|1|G|110
*
8P85|1|1|C|321
8P85|1|1|U|322
8P85|1|1|A|323
8P85|1|1|A|324
8P85|1|1|A|325
8P85|1|1|U|326
8P85|1|1|A|327
8P85|1|1|U|328
8P85|1|1|U|329
8P85|1|1|G|330
8P85|1|1|G|331
*
8P85|1|4|C|32
8P85|1|4|A|33
8P85|1|4|U|34
8P85|1|4|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain AI
- 60S ribosomal protein L35-A
- Chain AJ
- 60S ribosomal protein L36-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L4-A
- Chain t
- 60S ribosomal protein L13-A
- Chain v
- 60S ribosomal protein L15-A
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