J6_8P8M_002
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8P8M|1|A|G|2418, 8P8M|1|A|C|2760, 8P8M|1|A|A|2799, 8P8M|1|A|A|2801, 8P8M|1|A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|U|2416
8P8M|1|A|U|2417
8P8M|1|A|G|2418
8P8M|1|A|A|2419
*
8P8M|1|A|U|2611
8P8M|1|A|U|2612
8P8M|1|A|U|2613
8P8M|1|A|G|2614
*
8P8M|1|A|C|2627
8P8M|1|A|A|2628
*
8P8M|1|A|U|2650
8P8M|1|A|G|2651
8P8M|1|A|U|2652
8P8M|1|A|C|2653
*
8P8M|1|A|G|2754
8P8M|1|A|C|2755
8P8M|1|A|C|2756
8P8M|1|A|U|2757
8P8M|1|A|A|2758
8P8M|1|A|U|2759
8P8M|1|A|C|2760
8P8M|1|A|G|2761
8P8M|1|A|A|2762
8P8M|1|A|U|2763
8P8M|1|A|C|2764
8P8M|1|A|C|2765
*
8P8M|1|A|G|2793
8P8M|1|A|G|2794
8P8M|1|A|U|2795
8P8M|1|A|G|2796
8P8M|1|A|C|2797
8P8M|1|A|C|2798
8P8M|1|A|A|2799
8P8M|1|A|G|2800
8P8M|1|A|A|2801
8P8M|1|A|A|2802
8P8M|1|A|A|2803
8P8M|1|A|A|2804
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain LF
- 60S ribosomal protein L2-A
- Chain QP
- 60S ribosomal protein L18-A
- Chain QT
- 60S ribosomal protein L21-A
- Chain RA
- 60S ribosomal protein L28
- Chain RB
- 60S ribosomal protein L29
- Chain RQ
- 60S ribosomal protein L42-A
Coloring options: