J6_8P8N_001
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8P8N|1|A|A|67, 8P8N|1|A|U|329, 8P8N|1|LD|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8N|1|A|G|22
8P8N|1|A|A|23
8P8N|1|A|G|24
8P8N|1|A|U|25
8P8N|1|A|A|26
8P8N|1|A|C|27
*
8P8N|1|A|G|58
8P8N|1|A|G|59
8P8N|1|A|A|60
8P8N|1|A|A|61
8P8N|1|A|A|62
8P8N|1|A|A|63
8P8N|1|A|G|64
8P8N|1|A|A|65
8P8N|1|A|A|66
8P8N|1|A|A|67
8P8N|1|A|C|68
*
8P8N|1|A|G|75
8P8N|1|A|G|76
8P8N|1|A|A|77
8P8N|1|A|U|78
8P8N|1|A|U|79
*
8P8N|1|A|A|106
8P8N|1|A|A|107
8P8N|1|A|A|108
8P8N|1|A|A|109
8P8N|1|A|G|110
*
8P8N|1|A|C|321
8P8N|1|A|U|322
8P8N|1|A|A|323
8P8N|1|A|A|324
8P8N|1|A|A|325
8P8N|1|A|U|326
8P8N|1|A|A|327
8P8N|1|A|U|328
8P8N|1|A|U|329
8P8N|1|A|G|330
8P8N|1|A|G|331
*
8P8N|1|LD|C|32
8P8N|1|LD|A|33
8P8N|1|LD|U|34
8P8N|1|LD|C|35
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain LH
- 60S ribosomal protein L4-A
- Chain RH
- 60S ribosomal protein L35-A
- Chain RI
- 60S ribosomal protein L36-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: