J6_8PFR_001
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8PFR|1|A|A|67, 8PFR|1|A|U|329, 8PFR|1|LD|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PFR|1|A|G|22
8PFR|1|A|A|23
8PFR|1|A|G|24
8PFR|1|A|U|25
8PFR|1|A|A|26
8PFR|1|A|C|27
*
8PFR|1|A|G|58
8PFR|1|A|G|59
8PFR|1|A|A|60
8PFR|1|A|A|61
8PFR|1|A|A|62
8PFR|1|A|A|63
8PFR|1|A|G|64
8PFR|1|A|A|65
8PFR|1|A|A|66
8PFR|1|A|A|67
8PFR|1|A|C|68
*
8PFR|1|A|G|75
8PFR|1|A|G|76
8PFR|1|A|A|77
8PFR|1|A|U|78
8PFR|1|A|U|79
*
8PFR|1|A|A|106
8PFR|1|A|A|107
8PFR|1|A|A|108
8PFR|1|A|A|109
8PFR|1|A|G|110
*
8PFR|1|A|C|321
8PFR|1|A|U|322
8PFR|1|A|A|323
8PFR|1|A|A|324
8PFR|1|A|A|325
8PFR|1|A|U|326
8PFR|1|A|A|327
8PFR|1|A|U|328
8PFR|1|A|U|329
8PFR|1|A|G|330
8PFR|1|A|G|331
*
8PFR|1|LD|C|32
8PFR|1|LD|A|33
8PFR|1|LD|U|34
8PFR|1|LD|C|35
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain LH
- 60S ribosomal protein L4-A
- Chain RH
- 60S ribosomal protein L35-A
- Chain RI
- 60S ribosomal protein L36-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: