J6_8PNN_002
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8PNN|1|1|G|2418, 8PNN|1|1|C|2760, 8PNN|1|1|A|2799, 8PNN|1|1|A|2801, 8PNN|1|1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PNN|1|1|U|2416
8PNN|1|1|U|2417
8PNN|1|1|G|2418
8PNN|1|1|A|2419
*
8PNN|1|1|U|2611
8PNN|1|1|U|2612
8PNN|1|1|U|2613
8PNN|1|1|G|2614
*
8PNN|1|1|C|2627
8PNN|1|1|A|2628
*
8PNN|1|1|U|2650
8PNN|1|1|G|2651
8PNN|1|1|U|2652
8PNN|1|1|C|2653
*
8PNN|1|1|G|2754
8PNN|1|1|C|2755
8PNN|1|1|C|2756
8PNN|1|1|U|2757
8PNN|1|1|A|2758
8PNN|1|1|U|2759
8PNN|1|1|C|2760
8PNN|1|1|G|2761
8PNN|1|1|A|2762
8PNN|1|1|U|2763
8PNN|1|1|C|2764
8PNN|1|1|C|2765
*
8PNN|1|1|G|2793
8PNN|1|1|G|2794
8PNN|1|1|U|2795
8PNN|1|1|G|2796
8PNN|1|1|C|2797
8PNN|1|1|C|2798
8PNN|1|1|A|2799
8PNN|1|1|G|2800
8PNN|1|1|A|2801
8PNN|1|1|A|2802
8PNN|1|1|A|2803
8PNN|1|1|A|2804
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AB
- 60S ribosomal protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AP
- 60S ribosomal protein L42-A
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- 60S ribosomal protein L15-A
- Chain y
- 60S ribosomal protein L18-A
Coloring options: